CDC-Authored Genomics and Precision Health Publications Database
Last data update: May 20, 2024. (Total: 6109 publications)
Query Trace: Contact tracing[original query] |
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High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA
Switzer WM , Shankar A , Jia H , Knyazev S , Ambrosio F , Kelly R , Zheng H , Campbell EM , Cintron R , Pan Y , Saduvala N , Panneer N , Richman R , Singh MB , Thoroughman DA , Blau EF , Khalil GM , Lyss S , Heneine W . Virus Evol 2024 10 (1) veae015 |
Remote surveillance and detection of SARS-CoV-2 transmission among household members in King County, Washington
Emanuels A , Casto AM , Heimonen J , O'Hanlon J , Chow EJ , Ogokeh C , Rolfes MA , Han PD , Hughes JP , Uyeki TM , Frazar C , Chung E , Starita LM , Englund JA , Chu HY . BMC Infect Dis 2024 24 (1) 309 |
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.
Arias A , Watson SJ , Asogun D , Tobin EA , Lu J , Phan MVT , Jah U , Wadoum REG , Meredith L , Thorne L , Caddy S , Tarawalie A , Langat P , Dudas G , Faria NR , Dellicour S , Kamara A , Kargbo B , Kamara BO , Gevao S , Cooper D , Newport M , Horby P , Dunning J , Sahr F , Brooks T , Simpson AJH , Groppelli E , Liu G , Mulakken N , Rhodes K , Akpablie J , Yoti Z , Lamunu M , Vitto E , Otim P , Owilli C , Boateng I , Okoror L , Omomoh E , Oyakhilome J , Omiunu R , Yemisis I , Adomeh D , Ehikhiametalor S , Akhilomen P , Aire C , Kurth A , Cook N , Baumann J , Gabriel M , Wölfel R , Di Caro A , Carroll MW , Günther S , Redd J , Naidoo D , Pybus OG , Rambaut A , Kellam P , Goodfellow I , Cotten M . Virus Evol 2016 2 (1) vew016 |
Molecular characterization of the 2022 Sudan virus disease outbreak in Uganda
Balinandi S , Whitmer S , Mulei S , Nassuna C , Pimundu G , Muyigi T , Kainulainen M , Shedroff E , Krapiunaya I , Scholte F , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Kiconco J , Harris JR , Ario AR , Kagirita A , Bosa HK , Ssewanyana I , Nabadda S , Mwebesa HG , Aceng JR , Atwine D , Lutwama JJ , Shoemaker TR , Montgomery JM , Kaleebu P , Klena JD . J Virol 2023 97 (10) e0059023 |
Genomic epidemiology of a severe acute respiratory syndrome coronavirus 2 outbreak in a US major league soccer club: Was it travel related
Carmola LR , Turcinovic J , Draper G , Webner D , Putukian M , Silvers-Granelli H , Bombin A , Connor BA , Angelo KM , Kozarsky P , Libman M , Huits R , Hamer DH , Fairley JK , Connor JH , Piantadosi A , Bourque DL . Open Forum Infect Dis 2023 10 (6) ofad235 |
Probable transmission of SARS-CoV-2 from African lion to zoo employees, Indiana, USA, 2021
Siegrist AA , Richardson KL , Ghai RR , Pope B , Yeadon J , Culp B , Behravesh CB , Liu L , Brown JA , Boyer LV . Emerg Infect Dis 2023 29 (6) 1102-1108 |
Assessment of COVID-19 outbreaks in Long-Term Care Facilities.
Bennett CC , Welton M , Bos J , Moon G , Berkley A , Kavlak L , Pearson J , Turabelidze G , Frazier J , Fehrenbach N , Brown CK . J Hosp Infect 2023 134 7-10 |
COVID-19 on the Nile: a cross-sectional investigation of COVID-19 among Nile River cruise travellers returning to the United States, February-march 2020.
Guagliardo SAJ , Quilter LAS , Uehara A , White SB , Talarico S , Tong S , Paden CR , Zhang J , Li Y , Pray I , Novak RT , Fukunaga R , Rodriguez A , Medley AM , Wagner R , Weinberg M , Brown CM , Friedman CR . J Travel Med 2022 |
Active surveillance and early detection of community transmission of SARS-CoV-2 Mu variant (B.1.621) in the Brazilian Amazon.
Oliveira GS , Silva-Flannery L , daSilva JF , Siza C , Esteves RJ , Marston BJ , Morgan J , Plucinski M , Roca TP , Silva Ampd , Pereira SS , Salcedo JMV , Pereira D , Naveca FG , VieiraDall'Acqua DS . J Med Virol 2022 94 (7) 3410-3415 |
Contact tracing outcomes among household contacts of fully vaccinated COVID-19 patients - San Francisco, California, January 29-July 2, 2021.
Sachdev DD , Chew Ng R , Sankaran M , Ernst A , Hernandez KT , Servellita V , Sotomayor-Gonzalez A , Stoltey J , Cohen SE , Nguyen TQ , Chiu C , Philip S . Clin Infect Dis 2021 75 (1) e267-e275 |
MicrobeTrace: Retooling molecular epidemiology for rapid public health response.
Campbell EM , Boyles A , Shankar A , Kim J , Knyazev S , Cintron R , Switzer WM . PLoS Comput Biol 2021 17 (9) e1009300 |
Multiple Variants of SARS-CoV-2 in a University Outbreak After Spring Break - Chicago, Illinois, March-May 2021.
Doyle K , Teran RA , Reefhuis J , Kerins JL , Qiu X , Green SJ , Choi H , Madni SA , Kamal N , Landon E , Albert RC , Pacilli M , Furtado LE , Hayden MK , Kunstman KJ , Bethel C , Megger L , Fricchione MJ , Ghinai I . MMWR Morb Mortal Wkly Rep 2021 70 (35) 1195-1200 |
Intersection of Syphilis and HIV Networks to Identify Opportunities to Enhance HIV Prevention.
Dennis AM , Cressman A , Pasquale D , Frost SDW , Kelly E , Guy J , Mobley V , Samoff E , Hurt CB , McNeil C , Hightow-Weidman L , Carry M , Hogben M , Seña AC . Clin Infect Dis 2021 74 (3) 498-506 |
Introduction, Transmission Dynamics, and Fate of Early SARS-CoV-2 Lineages in Santa Clara County, California.
Villarino E , Deng X , Kemper CA , Jorden MA , Bonin B , Rudman SL , Han GS , Yu G , Wang C , Federman S , Bushnell B , Wadford DA , Lin W , Tao Y , Paden CR , Bhatnagar J , MacCannell T , Tong S , Batson J , Chiu CY . J Infect Dis 2021 224 (2) 207-217 |
SARS-CoV-2 transmission in a Georgia school district - United States, December 2020-January 2021.
Gettings JR , Gold JAW , Kimball A , Forsberg K , Scott C , Uehara A , Tong S , Hast M , Swanson MR , Morris E , Oraka E , Almendares O , Thomas ES , Mehari L , McCloud J , Roberts G , Crosby D , Balajee A , Burnett E , Chancey RJ , Cook P , Donadel M , Espinosa C , Evans ME , Fleming-Dutra KE , Forero C , Kukielka EA , Li Y , Marcet PL , Mitruka K , Nakayama JY , Nakazawa Y , O'Hegarty M , Pratt C , Rice ME , Rodriguez Stewart RM , Sabogal R , Sanchez E , Velasco-Villa A , Weng MK , Zhang J , Rivera G , Parrott T , Franklin R , Memark J , Drenzek C , Hall AJ , Kirking HL , Tate JE , Vallabhaneni S . Clin Infect Dis 2021 74 (2) 319-326 |
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020.
Karmarkar E , Blanco I , Amornkul P , DuBois A , Deng X , Moonan PK , Rubenstein BL , Miller DA , Kennedy I , Yu J , Dauterman J , Ongpin M , Hathaway W , Hoo L , Trammell S , Ememu E , Yu G , Khwaja Z , Lu W , Talai N , Jain S , Louie J , Philip S , Federman S , Masinde G , Wadford DA , Bobba N , Stoltey J , Smith A , Epson E , Chiu C , Bennett A , Vasquez AM , Williams T . Infect Control Hosp Epidemiol 2020 42 (10) 1-20 |
Risk Assessment and Management of COVID-19 Among Travelers Arriving at Designated U.S. Airports, January 17-September 13, 2020.
Dollard P , Griffin I , Berro A , Cohen NJ , Singler K , Haber Y , de la Motte Hurst C , Stolp A , Atti S , Hausman L , Shockey CE , Roohi S , Brown CM , Rotz LD , Cetron MS , Alvarado-Ramy F . MMWR Morb Mortal Wkly Rep 2020 69 (45) 1681-1685 |
Probabilistic reconstruction of measles transmission clusters from routinely collected surveillance data.
Robert A , Kucharski AJ , Gastanaduy PA , Paul P , Funk S . J R Soc Interface 2020 17 (168) 20200084 |
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.
Deng X , Gu W , Federman S , du Plessis L , Pybus OG , Faria N , Wang C , Yu G , Bushnell B , Pan CY , Guevara H , Sotomayor-Gonzalez A , Zorn K , Gopez A , Servellita V , Hsu E , Miller S , Bedford T , Greninger AL , Roychoudhury P , Starita LM , Famulare M , Chu HY , Shendure J , Jerome KR , Anderson C , Gangavarapu K , Zeller M , Spencer E , Andersen KG , MacCannell D , Paden CR , Li Y , Zhang J , Tong S , Armstrong G , Morrow S , Willis M , Matyas BT , Mase S , Kasirye O , Park M , Masinde G , Chan C , Yu AT , Chai SJ , Villarino E , Bonin B , Wadford DA , Chiu CY . Science 2020 369 (6503) 582-587 |
Using an Established Outbreak Response Plan and Molecular Epidemiology Methods in an HIV Transmission Cluster Investigation, Tennessee, January-June 2017.
Sizemore L , Fill MM , Mathieson SA , Black J , Brantley M , Cooper K , Garrett J , Switzer WM , Peters PJ , Wester C . Public Health Rep 2020 135 (3) 33354920915445 |
Mumps: an Update on Outbreaks, Vaccine Efficacy, and Genomic Diversity.
Lam E , Rosen JB , Zucker JR . Clin Microbiol Rev 2020 33 (2) |
Scope and extent of healthcare-associated Middle East respiratory syndrome coronavirus transmission during two contemporaneous outbreaks in Riyadh, Saudi Arabia, 2017.
Alanazi KH , Killerby ME , Biggs HM , Abedi GR , Jokhdar H , Alsharef AA , Mohammed M , Abdalla O , Almari A , Bereagesh S , Tawfik S , Alresheedi H , Alhakeem RF , Hakawi A , Alfalah H , Amer H , Thornburg NJ , Tamin A , Trivedi S , Tong S , Lu X , Queen K , Li Y , Sakthivel SK , Tao Y , Zhang J , Paden CR , Al-Abdely HM , Assiri AM , Gerber SI , Watson JT . Infect Control Hosp Epidemiol 2019 40 (1) 79-88 |
HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015.
Peters PJ , Pontones P , Hoover KW , Patel MR , Galang RR , Shields J , Blosser SJ , Spiller MW , Combs B , Switzer WM , Conrad C , Gentry J , Khudyakov Y , Waterhouse D , Owen SM , Chapman E , Roseberry JC , McCants V , Weidle PJ , Broz D , Samandari T , Mermin J , Walthall J , Brooks JT , Duwve JM . N Engl J Med 2016 375 (3) 229-39 |
HIV/AIDS outbreak investigation in Jalalpur Jattan (JPJ), Gujrat, Pakistan
Ansari JA , Salman M , Safdar RM , Ikram N , Mahmood T , Zaheer HA , Walke H , Asghar RJ . J Epidemiol Glob Health 2013 3 (4) 261-8 |
Measles outbreak associated with an international youth sporting event in the United States, 2007
Chen TH , Kutty P , Lowe LE , Hunt EA , Blostein J , Espinoza R , Dykewicz CA , Redd S , Rota JS , Rota PA , Lute JR , Lurie P , Nguyen MD , Moll M , Reef SE , Sinclair JR , Bellini WJ , Seward JF , Ostroff SM . Pediatr Infect Dis J 2010 29 (9) 794-800 |
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- Page last updated:May 20, 2024
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